This paper presents a novel positive and negative set selection strategy for contrastive learning of medical images based on labels that can be extracted from clinical data. In the medical field, there exists a variety of labels for data that serve different purposes at different stages of a diagnostic and treatment process. Clinical labels and biomarker labels are two examples. In general, clinical labels are easier to obtain in larger quantities because they are regularly collected during routine clinical care, while biomarker labels require expert analysis and interpretation to obtain. Within the field of ophthalmology, previous work has shown that clinical values exhibit correlations with biomarker structures that manifest within optical coherence tomography (OCT) scans. We exploit this relationship between clinical and biomarker data to improve performance for biomarker classification. This is accomplished by leveraging the larger amount of clinical data as pseudo-labels for our data without biomarker labels in order to choose positive and negative instances for training a backbone network with a supervised contrastive loss. In this way, a backbone network learns a representation space that aligns with the clinical data distribution available. Afterwards, we fine-tune the network trained in this manner with the smaller amount of biomarker labeled data with a cross-entropy loss in order to classify these key indicators of disease directly from OCT scans. Our method is shown to outperform state of the art self-supervised methods by as much as 5% in terms of accuracy on individual biomarker detection.
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眼睛的临床诊断是对多种数据模式进行的,包括标量临床标签,矢量化生物标志物,二维底面图像和三维光学相干性层析成像(OCT)扫描。临床从业者使用所有可用的数据模式来诊断和治疗糖尿病性视网膜病(DR)或糖尿病黄斑水肿(DME)等眼部疾病。在眼科医学领域启用机器学习算法的使用需要研究治疗期内所有相关数据之间的关系和相互作用。现有的数据集受到限制,因为它们既不提供数据,也没有考虑数据模式之间的显式关系建模。在本文中,我们介绍了用于研究以上限制的视觉眼睛语义(橄榄)数据集的眼科标签。这是第一个OCT和近IIR眼底数据集,其中包括临床标签,生物标记标签,疾病标签和时间序列的患者治疗信息,来自相关临床试验。该数据集由1268个近红外图像组成,每个图像至少具有49个10月扫描和16个生物标志物,以及4个临床标签和DR或DME的疾病诊断。总共有96张眼睛的数据在至少两年的时间内平均,每只眼睛平均治疗66周和7次注射。我们在医学图像分析中为橄榄数据集进行了橄榄数据集的实用性,并为核心和新兴机器学习范式提供了基准和具体研究方向。
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在地震解释中,各种岩石结构的像素级标签可能耗时且获得昂贵。结果,通常存在一系列非平凡的未标记数据,这些数据仅仅是因为传统的深度学习方法依赖于完全标记的卷。为了纠正这个问题,已经提出了使用自我监督的方法来从未标记的数据中学习有用的表示形式。但是,传统的对比学习方法是基于从自然图像领域的假设,这些假设不利用地震环境。为了将这种环境纳入对比学习中,我们提出了一种基于切片在地震量中的位置的新型积极选择策略。我们表明,在语义分割任务中,从我们的方法表现出的学术表现形式超出了艺术对比的学习方法。
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The previous fine-grained datasets mainly focus on classification and are often captured in a controlled setup, with the camera focusing on the objects. We introduce the first Fine-Grained Vehicle Detection (FGVD) dataset in the wild, captured from a moving camera mounted on a car. It contains 5502 scene images with 210 unique fine-grained labels of multiple vehicle types organized in a three-level hierarchy. While previous classification datasets also include makes for different kinds of cars, the FGVD dataset introduces new class labels for categorizing two-wheelers, autorickshaws, and trucks. The FGVD dataset is challenging as it has vehicles in complex traffic scenarios with intra-class and inter-class variations in types, scale, pose, occlusion, and lighting conditions. The current object detectors like yolov5 and faster RCNN perform poorly on our dataset due to a lack of hierarchical modeling. Along with providing baseline results for existing object detectors on FGVD Dataset, we also present the results of a combination of an existing detector and the recent Hierarchical Residual Network (HRN) classifier for the FGVD task. Finally, we show that FGVD vehicle images are the most challenging to classify among the fine-grained datasets.
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Time series, sets of sequences in chronological order, are essential data in statistical research with many forecasting applications. Although recent performance in many Transformer-based models has been noticeable, long multi-horizon time series forecasting remains a very challenging task. Going beyond transformers in sequence translation and transduction research, we observe the effects of down-and-up samplings that can nudge temporal saliency patterns to emerge in time sequences. Motivated by the mentioned observation, in this paper, we propose a novel architecture, Temporal Saliency Detection (TSD), on top of the attention mechanism and apply it to multi-horizon time series prediction. We renovate the traditional encoder-decoder architecture by making as a series of deep convolutional blocks to work in tandem with the multi-head self-attention. The proposed TSD approach facilitates the multiresolution of saliency patterns upon condensed multi-heads, thus progressively enhancing complex time series forecasting. Experimental results illustrate that our proposed approach has significantly outperformed existing state-of-the-art methods across multiple standard benchmark datasets in many far-horizon forecasting settings. Overall, TSD achieves 31% and 46% relative improvement over the current state-of-the-art models in multivariate and univariate time series forecasting scenarios on standard benchmarks. The Git repository is available at https://github.com/duongtrung/time-series-temporal-saliency-patterns.
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Timely and effective feedback within surgical training plays a critical role in developing the skills required to perform safe and efficient surgery. Feedback from expert surgeons, while especially valuable in this regard, is challenging to acquire due to their typically busy schedules, and may be subject to biases. Formal assessment procedures like OSATS and GEARS attempt to provide objective measures of skill, but remain time-consuming. With advances in machine learning there is an opportunity for fast and objective automated feedback on technical skills. The SimSurgSkill 2021 challenge (hosted as a sub-challenge of EndoVis at MICCAI 2021) aimed to promote and foster work in this endeavor. Using virtual reality (VR) surgical tasks, competitors were tasked with localizing instruments and predicting surgical skill. Here we summarize the winning approaches and how they performed. Using this publicly available dataset and results as a springboard, future work may enable more efficient training of surgeons with advances in surgical data science. The dataset can be accessed from https://console.cloud.google.com/storage/browser/isi-simsurgskill-2021.
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Modern Deep Learning (DL) models have grown to sizes requiring massive clusters of specialized, high-end nodes to train. Designing such clusters to maximize both performance and utilization to amortize their steep cost is a challenging task requiring careful balance of compute, memory, and network resources. Moreover, a plethora of each model's tuning knobs drastically affect the performance, with optimal values often depending on the underlying cluster's characteristics, which necessitates a complex cluster-workload co-design process. To facilitate the design space exploration of such massive DL training clusters, we introduce COMET a holistic cluster design methodology and workflow to jointly study the impact of parallelization strategies and key cluster resource provisioning on the performance of distributed DL training. We develop a step-by-step process to establish a reusable and flexible methodology, and demonstrate its application with a case study of training a Transformer-1T model on a cluster of variable compute, memory, and network resources. Our case study demonstrates COMET's utility in identifying promising architectural optimization directions and guiding system designers in configuring key model and cluster parameters.
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We introduce Action-GPT, a plug and play framework for incorporating Large Language Models (LLMs) into text-based action generation models. Action phrases in current motion capture datasets contain minimal and to-the-point information. By carefully crafting prompts for LLMs, we generate richer and fine-grained descriptions of the action. We show that utilizing these detailed descriptions instead of the original action phrases leads to better alignment of text and motion spaces. Our experiments show qualitative and quantitative improvement in the quality of synthesized motions produced by recent text-to-motion models. Code, pretrained models and sample videos will be made available at https://actiongpt.github.io
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The deployment of machine learning models in safety-critical applications comes with the expectation that such models will perform well over a range of contexts (e.g., a vision model for classifying street signs should work in rural, city, and highway settings under varying lighting/weather conditions). However, these one-size-fits-all models are typically optimized for average case performance, encouraging them to achieve high performance in nominal conditions but exposing them to unexpected behavior in challenging or rare contexts. To address this concern, we develop a new method for training context-dependent models. We extend Bridge-Mode Connectivity (BMC) (Garipov et al., 2018) to train an infinite ensemble of models over a continuous measure of context such that we can sample model parameters specifically tuned to the corresponding evaluation context. We explore the definition of context in image classification tasks through multiple lenses including changes in the risk profile, long-tail image statistics/appearance, and context-dependent distribution shift. We develop novel extensions of the BMC optimization for each of these cases and our experiments demonstrate that model performance can be successfully tuned to context in each scenario.
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Pictionary, the popular sketch-based guessing game, provides an opportunity to analyze shared goal cooperative game play in restricted communication settings. However, some players occasionally draw atypical sketch content. While such content is occasionally relevant in the game context, it sometimes represents a rule violation and impairs the game experience. To address such situations in a timely and scalable manner, we introduce DrawMon, a novel distributed framework for automatic detection of atypical sketch content in concurrently occurring Pictionary game sessions. We build specialized online interfaces to collect game session data and annotate atypical sketch content, resulting in AtyPict, the first ever atypical sketch content dataset. We use AtyPict to train CanvasNet, a deep neural atypical content detection network. We utilize CanvasNet as a core component of DrawMon. Our analysis of post deployment game session data indicates DrawMon's effectiveness for scalable monitoring and atypical sketch content detection. Beyond Pictionary, our contributions also serve as a design guide for customized atypical content response systems involving shared and interactive whiteboards. Code and datasets are available at https://drawm0n.github.io.
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